nvim/MIGRATION_PLAN.md

# Neovim Migration Checklist

Source of truth for the step-by-step rebuild. Keep this concise and up to date. See details in `neovim-migration-guide.md`.

## Phase 0 — Ground Rules
- [x] Create AGENTS.md with rules
  
## Phase 1 — Clean & Archive Legacy Config

## Phase 1.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase

## Phase 1.2 — Inventory legacy files
- [x] Inventory existing Vimscript, plugin files, and directories

## Phase 1.3 — Create archive location
- [x] Create `legacy/` archive folder within this config

## Phase 1.4 — Move legacy files into archive
- [x] Move legacy init files and plugin directories into `legacy/` (do not delete)

## Phase 1.5 — Document archived contents
- [x] Optionally add `legacy/README.md` noting what was archived

## Phase 1.6 — Preserve selected directories
- [x] Keep `undodir`, `spell`, `view`, `UltiSnips`, `templates` as-is for now (review later)

## Phase 2 — Bootstrap

## Phase 2.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase

## Phase 2.2 — Scaffold Lua config skeleton
- [x] Scaffold Lua config skeleton (`init.lua`, `lua/settings.lua`, `lua/keymaps.lua`, `lua/autocmds.lua`, `lua/utils.lua`, `lua/plugins/`)

## Phase 2.3 — Bootstrap lazy.nvim
- [x] Bootstrap `lazy.nvim` plugin manager

## Phase 2.4 — Disable unused providers
- [x] Disable unused providers (ruby, perl, node)

## Phase 2.5 — Ensure lazy boots without specs
- [x] Ensure lazy boots without specs (add empty `lua/plugins/init.lua`)

## Phase 3 — Core Editing & LSP

## Phase 3.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: PHP LSP = `intelephense`
- [x] Decision: Enable Markdown LSP = `marksman`
- [x] Decision: Use legacy `listchars` and `showbreak` values
- [x] Decision: Support per‑project config for `intelephense.includePaths`
- [x] Decision: No direnv fallback for local config

## Phase 3.2 — Non-plugin settings to Lua
- [x] Port non-plugin settings to Lua (options, listchars, showbreak, spelllang=en_gb)

## Phase 3.3 — Core completion stack
- [x] Add core completion stack: `nvim-cmp`, `cmp-nvim-lsp`, `cmp-buffer`, `cmp-path`, `LuaSnip`

## Phase 3.4 — Project‑local configuration (native exrc)
- [x] Confirm scope and priorities for this subphase
- [x] Decision: Use native `exrc` + `secure` instead of neoconf (neoconf incompatible with Neovim 0.11+ vim.lsp.config API)
- [x] Enable `exrc` and `secure` in settings.lua
- [x] Implement `.nvim.lua` loader in LSP config using `on_new_config` hook
- [x] Wire `intelephense.environment.includePaths` via `.nvim.lua`
- [x] Create validation workspaces: `WORKSPACE_TEST/` and `EXTERNAL_TEST/` with sample PHP files
- [x] Migrate to `vim.lsp.config()` and `vim.lsp.enable()` (Neovim 0.11+ native API)
- [x] Verify project settings load correctly from actual root_dir
- [x] Clean up debug notifications and temporary code

## Phase 3.7 — Clean LSP config
- [x] Remove debug/helper logic from LSP config
- [x] Migrate from deprecated `require('lspconfig')[server].setup()` to `vim.lsp.config()` + `vim.lsp.enable()`
- [x] Use `on_new_config` hook for project-local settings loading (loads from actual root_dir, not cwd)

## Phase 3.8 — Validate project-local LSP settings
- [x] Create test workspaces with `.nvim.lua` files
- [x] Validate settings load from actual root_dir via `on_new_config` hook
- [x] Verify `gd` works for external library references via `intelephense.environment.includePaths`
- [x] Clean up debug code and notifications

## Phase 3.9 — Native exrc + vim.lsp.config migration (RESOLVED)
- [x] Discovered neoconf incompatible with Neovim 0.11+ (GitHub issue #116, unresolved since May 2024)
- [x] Migrated to native `exrc` + `secure` approach (zero dependencies, aligned with minimal philosophy)
- [x] Implemented `.nvim.lua` loader using `on_new_config` hook (loads from actual root_dir)
- [x] Migrated from deprecated `require('lspconfig')` framework to `vim.lsp.config()` + `vim.lsp.enable()`
- [x] Root detection handled by nvim-lspconfig's native configs (no custom root_dir needed)
- [x] Validated `gd` works for external library symbols via `intelephense.environment.includePaths`
- [x] Settings schema: `.nvim.lua` returns `{ lsp = { [server_name] = { settings = {...} } } }`
- [x] Security: `secure` mode prompts user to trust `.nvim.lua` files before execution
- [x] Kept `single_file_support = false` for `intelephense`
- [x] Fixed duplicate `gd` results issue

## Phase 3.5 — LSP minimal defaults
- [x] Add `nvim-lspconfig` with minimal defaults (no over-configuration)
- [x] Add minimal LSP on-attach keymaps (gd, gr, K, gD, gI)
- [x] Add global LSP keymaps with fallback in `lua/keymaps.lua`
- [x] Intelephense: set `single_file_support=false`, root detection via nvim-lspconfig defaults
- [x] Project settings loaded via `on_new_config` hook from `.nvim.lua` files

## Phase 3.6 — LSP server management (Mason)
- [x] Confirm scope and priorities for this subphase
- [x] Add `williamboman/mason.nvim` and `williamboman/mason-lspconfig.nvim`
- [x] Ensure servers installed: `lua_ls`, `tsserver`, `html`, `cssls`, `jsonls`, `bashls`, `marksman`, `intelephense`
- [x] Keep our custom per-server setup; use Mason only for installation

## Phase 4 — Navigation

## Phase 4.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Skip Neo-tree in favor of netrw for navigation/visual context
- [x] Decision: Use netrw for project structure visualization and file preview
- [x] Decision: Telescope as primary "find file" tool
- [x] Decision: Add Oil.nvim for file manipulation (handles buffer sync on rename/move/delete)
- [x] Note: Oil.nvim is for evaluation; alternative is mini.files if too heavy

## Phase 4.2 — Configure netrw
- [x] Configure netrw with tree view, preview split, and basic settings (no banner, sensible defaults)
- [x] Created `lua/netrw-config.lua` with settings: tree view, horizontal preview split below, 50/50 split, human-readable sizes
- [x] Add netrw keymaps: `<leader>te` (new tab at current file's directory), `<leader>tE` (new tab at project root)
- [x] Decision: No `<leader>e` or `<leader>v` keymaps - use `:Ex`, `:Vex` directly when needed
- [x] Preview behavior: Enter opens file in netrw window, `p` opens 50/50 horizontal split below

## Phase 4.2.1 — PHP gf enhancement
- [x] Add PHP `includeexpr` for intelligent `gf` behavior (handles `__DIR__`, `__FILE__`, `dirname(__FILE__)` patterns)
- [x] Created `after/ftplugin/php.lua` with path resolution for WordPress/PHP patterns
- [x] Tested and validated with test-gf.php

## Phase 4.3 — Telescope setup
- [x] Add `telescope.nvim` + `telescope-fzf-native.nvim` for fuzzy finding
- [x] Configure basic pickers: `find_files`, `live_grep`, `buffers`, `help_tags`, `oldfiles`, `current_buffer_fuzzy_find`
- [x] Add LSP pickers: `lsp_document_symbols`, `lsp_workspace_symbols`
- [x] Keymaps configured:
  - `<leader>ff` - Find files
  - `<leader>fg` - Live grep (search text)
  - `<leader>fb` - Find buffers (with `<C-d>` to delete)
  - `<leader>fh` - Find help
  - `<leader>fr` - Recent files
  - `<leader>/` - Search current buffer
  - `<leader>fs` - Document symbols (LSP)
  - `<leader>fS` - Workspace symbols (LSP)
- [x] Minimal UI: dropdown theme for files/buffers, no previewer for quick selection

## Phase 4.4 — Oil.nvim for file manipulation
- [x] Add `stevearc/oil.nvim` for filesystem operations (rename, create, delete, copy, move)
- [x] Configure to handle buffer name sync on file operations
- [x] Keep minimal - use only when shell operations would cause buffer issues
- [x] Keymaps configured:
  - `<leader>fo` - Open Oil file browser (regular buffer)
  - `<leader>fO` - Open Oil in floating window (with floating previews)
  - `<C-p>` in Oil - Preview files (vertical split to right for regular, floating window for float mode)
- [x] Preview splits open to the right via `vertical = true` and `split = 'belowright'`
- [x] Floating window preview direction: `preview_split = "right"`
- [x] Note: Evaluate practicality; can switch to `mini.files` if preferred

## Phase 5 — Treesitter

## Phase 5.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Focus on languages: PHP, HTML, JavaScript, TypeScript, CSS, Markdown, Lua, Bash, JSON
- [x] Decision: Enable syntax highlighting and incremental selection (CR to expand, BS to shrink)
- [x] Decision: Enable textobjects for functions, classes, parameters, conditionals, loops
- [x] Decision: Enable autotag for HTML/PHP/JS/React files
- [x] Decision: Disable indent (experimental) to start; can enable per-filetype if stable

## Phase 5.2 — Base Treesitter
- [x] Add `nvim-treesitter` with incremental selection, highlighting
- [x] Configure parsers: lua, vim, vimdoc, php, html, javascript, typescript, tsx, css, scss, json, markdown, markdown_inline, bash, regex
- [x] Enable auto-install for missing parsers
- [x] Incremental selection keymaps: CR (init/expand), S-CR (scope expand), BS (shrink)
- [x] Disable for large files (>100KB) to maintain performance

## Phase 5.3 — Treesitter textobjects
- [x] Add `nvim-treesitter-textobjects`
- [x] Select keymaps: `af`/`if` (function), `ac`/`ic` (class), `aa`/`ia` (parameter), `ai`/`ii` (conditional), `al`/`il` (loop), `a/` (comment)
- [x] Move keymaps: `]f`/`[f` (next/prev function start), `]F`/`[F` (function end), similar for classes and parameters
- [x] Swap keymaps: `<leader>a`/`<leader>A` (swap parameter with next/prev)

## Phase 5.4 — Treesitter autotag
- [x] Add `nvim-ts-autotag`
- [x] Enable auto-close, auto-rename, and close-on-slash for HTML/PHP/JS/React/TS/Vue files

## Phase 6 — UX / Editing

## Phase 6.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: No cursorcolumn (as per AGENTS.md)
- [x] Decision: No auto-window toggling behavior (keep settings static)
- [x] Decision: No motion plugin (skip leap/flash)
- [x] Decision: Move undotree to separate Phase 6.8
- [x] UX settings to add: signcolumn, cursorline, colorcolumn

## Phase 6.2 — Core UX settings
- [x] Add signcolumn=yes (always show gutter for LSP/git)
- [x] Add cursorline (highlight current line)
- [x] Add colorcolumn=80,120 (visual guides)
- [x] No cursorcolumn (excluded as per AGENTS.md)
- [x] No per-window autocommands (keep simple)

## Phase 6.3 — Comment.nvim
- [x] Add `numToStr/Comment.nvim`
- [x] Configure for gcc/gc commenting
- [x] Add keymaps if needed

## Phase 6.4 — Surround
- [x] Add `kylechui/nvim-surround`
- [x] Minimal config with default keymaps (ys, ds, cs)

## Phase 6.5 — Autopairs
- [x] Add `windwp/nvim-autopairs`
- [x] Integrate with nvim-cmp

## Phase 6.6 — Indent guides
- [x] Add `lukas-reineke/indent-blankline.nvim`
- [x] Configure scope highlighting

## Phase 6.7 — Folding (UFO)
- [x] Add `kevinhwang91/nvim-ufo` for folding
- [x] Configure with Treesitter and LSP providers
- [x] Add fold keymaps (za, zR, zM, etc.)

## Phase 6.8 — Undotree
- [x] Add `mbbill/undotree`
- [x] Add keymap to toggle undotree
- [x] Configure minimal settings

## Phase 7 — Git Integration

## Phase 7.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Gitsigns with minimal config - signs in gutter, hunk navigation/actions only
- [x] Decision: Skip markdown rendering plugins entirely

## Phase 7.2 — Gitsigns
- [x] Add `lewis6991/gitsigns.nvim`
- [x] Configure signs in gutter (add, change, delete, topdelete, changedelete)
- [x] Add hunk navigation keymaps (]h/[h for next/prev hunk)
- [x] Add hunk action keymaps (stage, reset, preview)
- [x] Keep minimal - no inline blame, no advanced features

## Phase 8 — Copilot

## Phase 8.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Integrate Copilot into nvim-cmp as completion source
- [x] Decision: Auto-trigger suggestions as you type
- [x] Decision: No specific Copilot keymaps needed (use existing cmp keymaps)
- [x] Decision: Enable for all filetypes
- [x] Decision: Copilot suggestions appear before LSP suggestions in completion menu
- [x] Node.js v22.21.1 upgraded and confirmed working

## Phase 8.2 — Copilot setup
- [x] Add `zbirenbaum/copilot.lua` + `zbirenbaum/copilot-cmp`
- [x] Configure copilot.lua with auto-trigger and all filetypes
- [x] Add copilot-cmp as source to nvim-cmp
- [x] Set copilot-cmp priority higher than LSP in completion menu
- [x] Note: Copilot initializes on first InsertEnter; enter/exit insert mode once before using `:Copilot auth`

## Phase 9 — Formatting & Linting

## Phase 9.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Formatters - prettier (JS/TS/CSS/JSON/MD/HTML), phpcbf (PHP), stylua (Lua), black (Python)
- [x] Decision: Linters - eslint (JS/TS), phpcs (PHP), markdownlint (Markdown), ruff (Python)
- [x] Decision: Project-local executables preferred, fallback to global (node_modules/.bin/, vendor/bin/)
- [x] Decision: phpcs/phpcbf already installed globally with WordPress coding standards - no installation needed
- [x] Decision: Format-on-save enabled by default with toggle capability
- [x] Decision: Manual format keymaps: `<leader>lf` (normal), `<leader>lf` (visual range)
- [x] Decision: Respect project config files (.prettierrc, phpcs.xml, .eslintrc, pyproject.toml, etc.)
- [x] Strategy: Helper function detects project-local executables first, then global
- [x] WordPress: phpcs.xml in project root or --standard=WordPress flag for WordPress projects
- [x] Philosophy: Formatters are authoritative source of truth; Neovim settings should match formatter rules per filetype
- [x] Note: Phase 9.4 will align Neovim editor settings (tabstop, shiftwidth, expandtab) with formatter configurations

## Phase 9.2 — none-ls setup with project-aware executables
- [x] Add `nvimtools/none-ls.nvim`
- [x] Create helper function to detect project-local executables (node_modules/.bin/, vendor/bin/, Mason bin)
- [x] Configure formatters:
  - [x] prettier (project-local first, then Mason, then global)
  - [x] phpcbf (project-local first, then global system install - already available)
  - [x] stylua (Mason installed)
- [x] Add `mfussenegger/nvim-lint` for linting (none-ls removed most linters from builtins)
- [x] Configure linters via nvim-lint:
  - [x] eslint_d (project-local first, then Mason, then global - daemon version for speed)
  - [x] phpcs (project-local first, then global system install - already available)
  - [x] markdownlint (Mason installed)
- [x] Add format-on-save autocommand with toggle capability (`<leader>lt` to toggle)
- [x] Add manual format keymaps: `<leader>lf` (buffer), `<leader>lf` (visual range)
- [x] Ensure WordPress coding standards work via phpcs.xml or --standard flag
- [x] Search order: project node_modules/.bin/ → project vendor/bin/ → Mason bin → system PATH
- [x] Note: Linting runs on BufEnter, BufWritePost, InsertLeave events

## Phase 9.3 — Mason formatter/linter installation
- [x] Add `WhoIsSethDaniel/mason-tool-installer.nvim` for automated installation
- [x] Install via Mason: prettier, eslint_d, markdownlint, stylua, black, ruff
- [x] Note: phpcs/phpcbf already installed globally, skip Mason installation
- [x] Verify all tools available: Tools installed to ~/.local/share/nvim/mason/bin/

## Phase 9.4 — Align Neovim settings with formatter rules
- [x] Configure per-filetype settings to match formatter defaults
- [x] PHP: tabs, 2-width display (WordPress standards)
- [x] JS/TS/CSS/JSON/HTML: spaces, 2-width (Prettier defaults)
- [x] Lua: spaces, 2-width (common Neovim convention)
- [x] Markdown: spaces, 2-width (Prettier defaults)
- [x] Python: spaces, 4-width (Black/PEP 8 defaults)
- [x] Use autocmds in lua/autocmds.lua for filetype-specific tabstop, shiftwidth, expandtab
- [x] Set global defaults: 4-width, spaces (reasonable baseline)
- [x] Goal: Manual editing feels natural and matches what formatter will produce on save
- [x] Note: All settings kept explicit per-filetype for clarity and maintainability

## Phase 10 — Migrate Kept Behaviours

## Phase 10.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Port abbreviations to Lua via vim.cmd.iabbrev
- [x] Decision: Port shell template auto-loading via autocmd + BufReadPost
- [x] Decision: Whitespace highlighting already handled via listchars (Phase 3.2)
- [x] Decision: Skip persistent folds (UFO handles folding, no explicit persistence needed)

## Phase 10.2 — Abbreviations
- [x] Abbreviations: `adn→and`, `waht→what`, `tehn→then`, `functin→function`, `positin→position`
- [x] Created dedicated `lua/abbreviations.lua` for modularity and easier maintenance

## Phase 10.3 — Templates
- [x] Templates: auto-populate new `.sh` from template
- [x] Added BufNewFile autocmd for *.sh in lua/autocmds.lua

## Phase 10.4 — Whitespace highlighting
- [x] Whitespace highlighting (modern approach)
- [x] Note: Already handled via listchars in Phase 3.2 (settings.lua)

## Phase 10.5 — Persistent folds
- [x] Persistent folds (via UFO) -- no need, this is no longer required.
- [x] Note: UFO handles folding; no explicit persistence mechanism needed

## Phase 11 — Colorscheme: Modern Paper Tonic

## Phase 11.1 — Confirm scope and priorities
- [x] Confirm scope and priorities for this phase
- [x] Decision: Create modern Paper Tonic fork from scratch
- [x] Decision: Name = "paper-tonic-modern"
- [x] Decision: Location = inside nvim config initially, move to repo later
- [x] Decision: Structure = modular Lua colorscheme (colors.lua, groups/*.lua)
- [x] Phased approach:
  - Phase 11.2-11.4: Extract palette and base groups
  - Phase 11.5-11.6: General TreeSitter highlights (modern @* groups)
  - Phase 11.7: Semantic highlighting (custom CSS/HTML captures)
  - Phase 11.8: Plugin support (LSP, Telescope, Gitsigns, etc.)

## Phase 11.2 — Extract Paper Tonic color palette
- [x] Create `lua/paper-tonic-modern/colors.lua`
- [x] Extract all `c_*` color variables from Paper Tonic
- [x] Document what each color represents (foreground, background, accent colors)
- [x] Convert to modern format (keep hex, 256-color, ANSI mappings)

## Phase 11.3 — Create colorscheme structure
- [ ] Create directory structure:
  - `colors/paper-tonic-modern.lua` (entry point)
  - `lua/paper-tonic-modern/init.lua` (main logic)
  - `lua/paper-tonic-modern/colors.lua` (palette)
  - `lua/paper-tonic-modern/groups/` (highlight group definitions)
- [ ] Create helper function for setting highlights
- [ ] Set up colorscheme loading mechanism

## Phase 11.4 — Base vim highlight groups
- [ ] Create `lua/paper-tonic-modern/groups/editor.lua`
- [ ] Map Paper Tonic colors to base groups: Normal, Comment, LineNr, CursorLine, etc.
- [ ] Create `lua/paper-tonic-modern/groups/syntax.lua`
- [ ] Map to syntax groups: Function, String, Keyword, Identifier, etc.
- [ ] Test with simple Lua file to verify base colors work

## Phase 11.5 — Modern TreeSitter highlight groups
- [ ] Create `lua/paper-tonic-modern/groups/treesitter.lua`
- [ ] Map modern `@*` groups to Paper Tonic colors:
  - Core: @variable, @function, @keyword, @string, @number, @boolean, @comment
  - Types: @type, @property, @field, @parameter
  - Operators: @operator, @punctuation.delimiter, @punctuation.bracket
  - Language constructs: @keyword.function, @keyword.return, @keyword.conditional
- [ ] Use `:help treesitter-highlight-groups` as reference
- [ ] Test with multiple languages: Lua, PHP, JavaScript, HTML, CSS

## Phase 11.6 — Language-specific TreeSitter groups
- [ ] Add language-specific overrides (e.g., @variable.php, @tag.html)
- [ ] Ensure HTML tags, CSS selectors, PHP variables have appropriate colors
- [ ] Test across primary languages (HTML, PHP, JS, CSS, Markdown)

## Phase 11.7 — Semantic highlighting (custom captures)
- [ ] Create `lua/paper-tonic-modern/groups/semantic.lua`
- [ ] Define your custom semantic captures:
  - @CssClassName (for CSS .class and HTML class="" - same color)
  - @CssIdentifier (for CSS #id and HTML id="" - same color)
  - @DataAttribute, @DataAttributeValue (HTML data-* attributes)
  - @cssPseudoClass, @cssNestingSelector, @CssUniversalSelector (CSS-specific)
- [ ] Verify cross-language consistency: class names in HTML match CSS
- [ ] Test with existing custom queries (after/queries/css/highlights.scm, after/queries/html/highlights.scm)

## Phase 11.8 — Plugin highlight groups
- [ ] Create `lua/paper-tonic-modern/groups/lsp.lua`
- [ ] Define LSP diagnostics: DiagnosticError, DiagnosticWarn, DiagnosticHint, DiagnosticInfo
- [ ] Define LSP UI: LspReferenceText, LspReferenceRead, LspReferenceWrite
- [ ] Create `lua/paper-tonic-modern/groups/plugins.lua`
- [ ] Add Telescope highlights (TelescopeNormal, TelescopeBorder, TelescopeSelection)
- [ ] Add Gitsigns highlights (GitSignsAdd, GitSignsChange, GitSignsDelete)
- [ ] Add nvim-cmp highlights (CmpItemKind*, CmpItemMenu, etc.)
- [ ] Add Oil.nvim highlights if needed

## Phase 11.9 — Update plugin configuration
- [ ] Update `lua/plugins/colorscheme.lua` to use paper-tonic-modern
- [ ] Remove old Paper Tonic reference
- [ ] Remove colorscheme-overrides.lua (no longer needed)
- [ ] Test full config reload

## Phase 11.10 — Validation and polish
- [ ] Test all primary languages (Lua, PHP, HTML, CSS, JS, Markdown)
- [ ] Verify semantic consistency (CSS classes in HTML match CSS files)
- [ ] Check plugin UI colors (Telescope, Gitsigns, nvim-cmp)
- [ ] Verify LSP diagnostics are visible and distinct
- [ ] Document color scheme in README

## Phase 11.11 — Extract to separate repo (later)
- [ ] Move to `~/projects/paper-tonic-modern/`
- [ ] Update plugin config to point to new location
- [ ] Add proper README, LICENSE, screenshots
- [ ] Consider publishing to GitHub

## Phase 12 — Cleanup & Validation

## Phase 12.1 — Confirm scope and priorities
- [ ] Confirm scope and priorities for this phase

## Phase 12.2 — Retire legacy files
- [ ] Retire legacy Vimscript files (keep for reference until verified)

## Phase 12.3 — Startup performance
- [ ] Validate startup performance (no errors, fast launch)

## Phase 12.4 — Navigation validation
- [ ] Validate Telescope navigation + LSP jumps
- [ ] Validate netrw browsing and preview splits
- [ ] Validate Oil.nvim file operations

## Phase 12.5 — Language tooling validation
- [ ] Validate HTML/PHP/JS/Markdown tooling
- [ ] Verify LSP (gd, gr, K, diagnostics)
- [ ] Verify formatting (prettier, phpcbf, stylua)
- [ ] Verify linting (eslint_d, phpcs, markdownlint)

## Phase 12.6 — Final polish
- [ ] Review all keymaps and ensure they're documented
- [ ] Update README.md with final architecture and usage
- [ ] Clean up any remaining debug code or temporary comments

---

Notes:
- Keep plugin specs minimal; configure in their own `lua/plugins/*.lua` files.
- Avoid adding plugins not listed in the guide unless explicitly requested.
- Prefer simple defaults; only add settings that clearly improve workflow.
- Plugin approval policy: unlisted plugins may be proposed, but must be explicitly confirmed before installation.

Known Issues / Follow-ups:
- lua-language-server (lua_ls) from Mason failed to start due to missing shared library `libbfd-2.38-system.so`. Options:
  - Install lua-language-server via system package manager compatible with your distro.
  - Provide the required `libbfd` or adjust symlink to match expected soname.
  - Skip lua_ls for now; validation done with other servers (jsonls, intelephense).
- LSP root detection: In some cases, the parent repository is picked as the root (e.g., when a workspace lives inside another repo). Workaround: create an empty `.git` directory (or a marker like `.nvimroot`) in the intended workspace root to pin the project root for LSPs.

Decisions & Changes:
- **Neoconf dropped**: folke/neoconf.nvim incompatible with Neovim 0.11+ vim.lsp.config API (GitHub issue #116, open since May 2024, no resolution). Migrated to native `exrc` + `secure` approach.
- **vim.lsp.config migration**: Migrated from deprecated `require('lspconfig')[server].setup()` to `vim.lsp.config()` + `vim.lsp.enable()` (Neovim 0.11+ native API).
- **Project config format**: `.nvim.lua` files return `{ lsp = { [server_name] = { settings = {...} } } }`.
- **Security model**: `secure` mode prompts user to trust `.nvim.lua` files before execution (one-time per file hash).
- **Settings loading**: `on_new_config` hook loads project settings from actual `root_dir` (not cwd), ensuring correct behavior across different workspace structures.
- **Phase 4 Navigation Strategy**: Skipped Neo-tree in favor of built-in netrw for visual context and project structure browsing. Telescope for fuzzy finding. Oil.nvim for file manipulation (evaluation phase; alternative is mini.files). Rationale: User needs visual context and preview, not per-tab roots or complex tree features. File manipulation primarily done in shell, but Oil.nvim handles buffer sync issues when renaming/moving files.